STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2879PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: bur:Bcep18194_B0744 TetR family transcriptional regulator. (226 aa)    
Predicted Functional Partners:
Amir_2878
PFAM: monooxygenase FAD-binding; KEGG: gdj:Gdia_2837 monooxygenase FAD-binding.
 
     0.838
Amir_3818
PFAM: monooxygenase FAD-binding; KEGG: gdj:Gdia_2837 monooxygenase FAD-binding.
  
     0.503
Amir_4374
KEGG: scl:sce5500 hypothetical protein.
  
     0.455
Amir_3308
Transcriptional regulator, winged helix family; PFAM: transcriptional activator domain; transcriptional regulator domain protein; KEGG: scl:sce5225 protein kinase.
  
    0.453
Amir_4375
KEGG: scl:sce5500 hypothetical protein.
  
     0.451
Amir_3699
PFAM: monooxygenase FAD-binding; KEGG: gdj:Gdia_2837 monooxygenase FAD-binding.
  
     0.436
Amir_4686
KEGG: scl:sce5500 hypothetical protein.
  
     0.417
Amir_2589
PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: kpe:KPK_3281 tetracycline repressor protein class A from transposon 1721.
  
     0.408
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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