STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2908PFAM: extracellular solute-binding protein family 5; KEGG: extracellular solute-binding protein; K02035 peptide/nickel transport system substrate-binding protein. (501 aa)    
Predicted Functional Partners:
Amir_4718
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gme:Gmet_1236 binding-protein dependent transport system inner membrane protein.
 
 
 0.662
Amir_2459
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pca:Pcar_1867 ABC-type transport system protein.
 
 
 0.658
Amir_4717
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: peptide transport system permease protein; K02033 peptide/nickel transport system permease protein.
 
 
 0.622
Amir_2458
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rsh:Rsph17029_4148 binding-protein-dependent transport systems inner membrane component.
 
 
 0.610
Amir_4928
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2742 binding-protein-dependent transport systems inner membrane component.
  
 
 0.607
Amir_6186
PFAM: ABC transporter related; binding-protein- dependent transport systems inner membrane component; SMART: AAA ATPase; KEGG: mxa:MXAN_6553 putative oligopeptide/dipeptide ABC transporter, permease/ATP-binding protein.
  
 
 0.489
Amir_0678
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bpt:Bpet2850 ABC transporter inner membrane protein.
 
 
 0.472
Amir_6664
PFAM: pyruvate flavodoxin/ferredoxin oxidoreductase domain protein; KEGG: eba:ebA3149 2-oxoglutarate ferredoxin oxidoreductase alpha subunit.
  
    0.471
Amir_0680
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bbt:BBta_6951 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.453
Amir_0765
Oligopeptide/dipeptide ABC transporter, ATPase subunit; KEGG: bra:BRADO1097 oligopeptide ABC transporter ATP-binding protein; TIGRFAM: oligopeptide/dipeptide ABC transporter, ATPase subunit; PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; Belongs to the ABC transporter superfamily.
 
 
 0.445
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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