STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2920PFAM: extracellular solute-binding protein family 1; KEGG: rle:pRL120659 putative substrate-binding component of ABC transporter. (424 aa)    
Predicted Functional Partners:
Amir_2919
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: ABC transporter membrane spanning protein (sugar); K02025 multiple sugar transport system permease protein.
 
 0.995
Amir_2918
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: rle:pRL120663 putative permease component of ABC transporter.
 
 
 0.952
Amir_2921
KEGG: ret:RHE_CH00075 hypothetical protein.
 
     0.841
Amir_2917
KEGG: hypothetical protein LOC686639.
       0.773
Amir_1980
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bsu:BSU07120 transmembrane lipoprotein.
 
 
 0.755
Amir_1807
PFAM: extracellular solute-binding protein family 1; KEGG: atc:AGR_L_1009 putative sugar transport sugar binding protein.
  
   
 0.742
Amir_2922
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: rlt:Rleg2_4009 D-isomer specific 2- hydroxyacid dehydrogenase NAD-binding.
 
   
 0.729
Amir_0971
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: sugar ABC transporter; K02025 multiple sugar transport system permease protein.
 
   0.701
Amir_1981
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: atc:AGR_L_3564 AlgM1, putative multiple sugar transport system permease protein.
 
  
 0.658
Amir_2923
PFAM: regulatory protein DeoR; periplasmic binding protein/LacI transcriptional regulator; SMART: regulatory protein DeoR; KEGG: ppw:PputW619_1959 LacI family transcription regulator.
 
     0.623
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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