STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2944PFAM: Peptidoglycan-binding LysM; KEGG: gsu:GSU0981 hypothetical protein. (236 aa)    
Predicted Functional Partners:
Amir_2948
KEGG: gsu:GSU0988 hypothetical protein.
 
 
 0.975
Amir_2947
PFAM: GPW/gp25 family protein; KEGG: gsu:GSU0986 tail lysozyme, putative.
 
   0.974
Amir_2943
TIGRFAM: conserved hypothetical protein; KEGG: noc:Noc_1873 phage tail region protein.
 
   0.962
Amir_2945
TIGRFAM: Rhs element Vgr protein; PFAM: Rhs element Vgr protein; KEGG: gbm:Gbem_2550 rhs element Vgr protein.
 
    0.952
Amir_2938
PFAM: tail sheath protein; KEGG: mlo:mlr6548 hypothetical protein.
 
 
 0.951
Amir_2949
TIGRFAM: phage tail protein; KEGG: rsq:Rsph17025_4353 hypothetical protein.
 
  
 0.938
Amir_5391
PFAM: tail sheath protein; KEGG: mlo:mlr6548 hypothetical protein.
 
 
 0.931
Amir_5381
KEGG: gsu:GSU0988 hypothetical protein.
 
 
 0.930
Amir_5382
PFAM: GPW/gp25 family protein; KEGG: gsu:GSU0986 tail lysozyme, putative.
 
   0.928
Amir_5390
TIGRFAM: conserved hypothetical protein; KEGG: gsu:GSU0976 hypothetical protein.
 
   0.890
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (26%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.