STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2972PFAM: Xylose isomerase domain protein TIM barrel; KEGG: lch:Lcho_4327 xylose isomerase domain- containing protein. (245 aa)    
Predicted Functional Partners:
Amir_2973
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: rec:RHECIAT_CH0002098 putative dehydrogenase protein.
 
    0.960
Amir_6846
PFAM: thiamine pyrophosphate protein central region; thiamine pyrophosphate protein domain protein TPP- binding; thiamine pyrophosphate protein TPP binding domain protein; KEGG: bid:Bind_2834 thiamine pyrophosphate protein central region; Belongs to the TPP enzyme family.
 
  
 0.620
Amir_2300
PFAM: Xylose isomerase domain protein TIM barrel; AP endonuclease 2 domain protein; KEGG: vei:Veis_3268 xylose isomerase domain protein TIM barrel.
 
     0.596
Amir_2299
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH0710 hypothetical protein.
 
    0.556
Amir_6847
PFAM: Myo-inositol catabolism IolB domain protein; KEGG: sus:Acid_1480 myo-inositol catabolism IolB domain-containing protein.
 
  
 0.555
Amir_4094
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: bha:BH0710 hypothetical protein.
 
    0.518
Amir_4818
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: atc:AGR_L_1778 hypothetical protein.
 
    0.494
Amir_3288
PFAM: oxidoreductase domain protein; Semialdehyde dehydrogenase NAD - binding; KEGG: rpb:RPB_2066 oxidoreductase-like.
 
    0.463
Amir_5530
PFAM: oxidoreductase domain protein; Oxidoreductase domain; KEGG: NAD binding Rossmann fold oxidoreductase; K00540.
 
    0.455
Amir_2974
PFAM: regulatory protein TetR; KEGG: pst:PSPTO_3319 TetR family transcriptional regulator.
  
     0.437
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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