STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_2977Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: psb:Psyr_3154 regulatory protein, TetR. (196 aa)    
Predicted Functional Partners:
Amir_2978
Xylan 1,4-beta-xylosidase; PFAM: glycoside hydrolase family 3 domain protein; KEGG: beta-glucosidase-related glycosidases.
 
     0.803
Amir_2979
PFAM: major facilitator superfamily MFS_1; General substrate transporter; KEGG: floR; florfenicol/chloramphenicol resistance transporter protein.
 
     0.643
Amir_2976
PFAM: NUDIX hydrolase; KEGG: bce:BC3339 phosphohydrolase (MutT/NUDIX family protein).
 
     0.543
Amir_4804
PFAM: regulatory protein TetR; KEGG: sml:Smlt4073 putative TetR family regulatory protein.
  
     0.411
Amir_2791
PFAM: regulatory protein TetR; KEGG: bav:BAV3196 TetR-family trasncriptional regulator.
  
     0.408
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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