STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3027PFAM: glycoside hydrolase family 12; KEGG: bja:blr1964 hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family. (229 aa)    
Predicted Functional Partners:
Amir_1791
PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: cja:CJA_2477 endo-1,4-beta- glucanase/xyloglucanase, putative, gly74A.
 
 
   0.753
Amir_4674
PFAM: lipolytic protein G-D-S-L family; KEGG: scl:sce5722 endo-1,4-beta-glucanase.
  
 
   0.751
Amir_4673
PFAM: lipolytic protein G-D-S-L family; KEGG: hypothetical protein.
  
 
   0.746
Amir_5074
PFAM: glycoside hydrolase family 16; KEGG: glycoside hydrolase, putative.
  
   
 0.703
Amir_4237
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
 
   
 0.688
Amir_1668
KEGG: msl:Msil_3349 hypothetical protein.
  
     0.683
Amir_2563
PFAM: Pectate lyase; KEGG: hypothetical protein.
  
   0.641
Amir_2571
PFAM: Pectate lyase; KEGG: hypothetical protein.
  
   0.640
Amir_3108
PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; KEGG: hypothetical protein.
  
 
   0.623
Amir_4177
PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
  
   0.609
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.