STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3040PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI; KEGG: ppw:PputW619_1959 LacI family transcription regulator. (339 aa)    
Predicted Functional Partners:
Amir_3046
TIGRFAM: rhamnulose-1-phosphate aldolase/alcohol dehydrogenase; PFAM: class II aldolase/adducin family protein; KR domain protein; short-chain dehydrogenase/reductase SDR; NAD-dependent epimerase/dehydratase; KEGG: rde:RD1_3083 short chain dehydrogenase.
 
 
   0.673
Amir_3045
TIGRFAM: L-rhamnose isomerase; PFAM: Xylose isomerase domain protein TIM barrel; KEGG: acr:Acry_2987 L-rhamnose isomerase.
 
     0.668
Amir_5693
PFAM: ferredoxin-dependent glutamate synthase; glutamate synthase alpha subunit domain protein; glutamate synthase; glutamine amidotransferase class-II; KEGG: afw:Anae109_0854 glutamate synthase (ferredoxin).
    
 
 0.638
Amir_3043
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bxe:Bxe_B1037 ABC sugar transporter, inner membrane subunit; Belongs to the binding-protein-dependent transport system permease family.
 
    0.635
Amir_3042
Monosaccharide-transporting ATPase; PFAM: inner-membrane translocator; KEGG: bac:BamMC406_1213 monosaccharide-transporting ATPase; Belongs to the binding-protein-dependent transport system permease family.
 
    0.629
Amir_3047
PFAM: carbohydrate kinase FGGY; KEGG: sus:Acid_3424 carbohydrate kinase, FGGY.
 
 
   0.605
Amir_3044
TIGRFAM: rhamnose ABC transporter, periplasmic rhamnose-binding protein; KEGG: bph:Bphy_3460 rhamnose ABC transporter, periplasmic rhamnose-binding protein.
 
    0.586
rbsA
ABC transporter related; Part of the ABC transporter complex RbsABC involved in ribose import. Responsible for energy coupling to the transport system. Belongs to the ABC transporter superfamily. Ribose importer (TC 3.A.1.2.1) family.
  
    0.551
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.