STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3135PFAM: 6-phosphogluconate dehydrogenase NAD-binding; KEGG: bur:Bcep18194_C6793 beta-hydroxyacid dehydrogenase. (288 aa)    
Predicted Functional Partners:
Amir_3134
PFAM: aminotransferase class-III; protein of unknown function RIO1; aminoglycoside phosphotransferase; ABC-1 domain protein; KEGG: sus:Acid_1674 aminotransferase.
       0.788
Amir_3132
PFAM: cytochrome P450; KEGG: mxa:MXAN_3943 cytochrome P450 family protein.
  
    0.738
Amir_3133
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; KEGG: bpy:Bphyt_6246 3-oxoacyl-(acyl-carrier- protein (ACP)) synthase III domain protein.
       0.738
Amir_3131
PFAM: 3-Oxoacyl-[acyl-carrier-protein (ACP)] synthase III domain protein; 3-Oxoacyl-[acyl-carrier- protein (ACP)] synthase III; KEGG: gdi:GDI3075 putative 3-oxoacyl-[acyl-carrier- protein] synthase 3 (3-oxoacyl [acyl-carrier-protein] synthase III) (beta-ketoacyl-ACP synthase III (KAS III).
       0.656
Amir_3130
KEGG: dal:Dalk_3308 acyl carrier protein.
       0.654
Amir_3530
Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; Tetracyclin repressor domain protein; KEGG: scl:sce6697 putative transcriptional regulator.
  
     0.566
Amir_3494
PFAM: Helix-turn-helix type 11 domain protein; KEGG: mxa:MXAN_2553 hypothetical protein.
  
     0.538
Amir_4997
Hypothetical protein; KEGG: bte:BTH_II2362 esterase EstC.
  
     0.530
Amir_3129
PFAM: FAD-binding 9 siderophore-interacting domain protein; KEGG: scl:sce8821 hypothetical protein.
 
     0.516
Amir_5081
PFAM: Carboxymuconolactone decarboxylase; KEGG: mlo:mlr7207 gamma carboxymuconolactone decarboxylase.
  
  
 0.499
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.