Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 annotation | node2 annotation | score |
Amir_3147 | Amir_3148 | PFAM: regulatory protein TetR; KEGG: bat:BAS4873 transcriptional regulator, putative. | PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl01_1835 ThiJ/PfpI. | 0.570 |
Amir_3147 | Amir_3149 | PFAM: regulatory protein TetR; KEGG: bat:BAS4873 transcriptional regulator, putative. | PFAM: Abortive infection protein; KEGG: sdn:Sden_1909 abortive infection protein. | 0.489 |
Amir_3147 | Amir_4462 | PFAM: regulatory protein TetR; KEGG: bat:BAS4873 transcriptional regulator, putative. | PFAM: alpha/beta hydrolase fold; KEGG: hypothetical protein. | 0.669 |
Amir_3148 | Amir_3147 | PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl01_1835 ThiJ/PfpI. | PFAM: regulatory protein TetR; KEGG: bat:BAS4873 transcriptional regulator, putative. | 0.570 |
Amir_3148 | Amir_3149 | PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl01_1835 ThiJ/PfpI. | PFAM: Abortive infection protein; KEGG: sdn:Sden_1909 abortive infection protein. | 0.655 |
Amir_3149 | Amir_3147 | PFAM: Abortive infection protein; KEGG: sdn:Sden_1909 abortive infection protein. | PFAM: regulatory protein TetR; KEGG: bat:BAS4873 transcriptional regulator, putative. | 0.489 |
Amir_3149 | Amir_3148 | PFAM: Abortive infection protein; KEGG: sdn:Sden_1909 abortive infection protein. | PFAM: ThiJ/PfpI domain protein; KEGG: pfo:Pfl01_1835 ThiJ/PfpI. | 0.655 |
Amir_4462 | Amir_3147 | PFAM: alpha/beta hydrolase fold; KEGG: hypothetical protein. | PFAM: regulatory protein TetR; KEGG: bat:BAS4873 transcriptional regulator, putative. | 0.669 |