STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3208Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: psa:PST_0620 hypothetical protein. (204 aa)    
Predicted Functional Partners:
Amir_3207
PFAM: bifunctional deaminase-reductase domain protein; KEGG: mxa:MXAN_1250 RibD domain protein.
 
     0.838
Amir_2767
KEGG: scl:sce5225 protein kinase.
  
     0.606
Amir_2713
PFAM: NB-ARC domain protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.
  
     0.582
Amir_6437
PFAM: NB-ARC domain protein; KEGG: scl:sce6858 hypothetical protein.
  
     0.572
Amir_3737
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: scl:sce3550 hypothetical protein.
  
     0.553
Amir_6259
PFAM: NB-ARC domain protein; KEGG: scl:sce5225 protein kinase.
  
     0.549
Amir_3544
KEGG: scl:sce3550 hypothetical protein.
  
     0.522
Amir_4182
SMART: AAA ATPase; Tetratricopeptide domain protein; KEGG: scl:sce5225 protein kinase.
  
     0.519
Amir_1666
Transcriptional regulator, XRE family; SMART: helix-turn-helix domain protein; KEGG: scl:sce8759 hypothetical protein.
  
     0.463
Amir_5323
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce6858 hypothetical protein.
  
     0.462
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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