STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3238Hypothetical protein; KEGG: jan:Jann_4076 putative secreted protein. (198 aa)    
Predicted Functional Partners:
Amir_4347
Putative signal transduction protein with Nacht domain; SMART: AAA ATPase; KEGG: scl:sce3623 hypothetical protein.
  
     0.667
Amir_5397
KEGG: scl:sce3623 hypothetical protein.
  
     0.527
Amir_5341
Hypothetical protein; KEGG: sus:Acid_4466 beta-lactamase.
  
     0.526
Amir_3237
Anti-sigma-factor antagonist; TIGRFAM: anti-anti-sigma factor; PFAM: Sulfate transporter/antisigma-factor antagonist STAS; KEGG: sfu:Sfum_4033 anti-sigma-factor antagonist.
       0.503
Amir_6080
KEGG: bpd:BURPS668_A3050 hypothetical protein.
  
     0.490
Amir_5839
Hypothetical protein.
  
     0.456
Amir_6361
PFAM: cell divisionFtsK/SpoIIIE; KEGG: pha:PSHAb0091 cell divisionFtsK/SpoIIIE domain-containing protein.
  
     0.425
Amir_1545
KEGG: scl:sce6782 hypothetical protein.
  
     0.424
Amir_0921
DNA segregation ATPase FtsK/SpoIIIE-related protein; KEGG: pha:PSHAb0091 cell divisionFtsK/SpoIIIE domain-containing protein.
  
     0.414
Amir_1669
KEGG: mag:amb3212 periplasmic protein TonB, links inner and outer membranes.
  
     0.404
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.