STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3466PFAM: extracellular solute-binding protein family 5; KEGG: mlo:mlr6082 ABC transporter, binding protein component. (596 aa)    
Predicted Functional Partners:
Amir_3464
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6084 ABC transporter, permease.
   0.964
Amir_3465
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: mlo:mlr6083 ABC transporter, permease.
 
 0.960
Amir_3463
PFAM: ABC transporter related; Oligopeptide/dipeptide ABC transporter domain protein; SMART: AAA ATPase; KEGG: cti:RALTA_B1385 dipeptide ABC transporter atp_binding domain; Belongs to the ABC transporter superfamily.
 
  
 0.896
Amir_4928
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: spe:Spro_2742 binding-protein-dependent transport systems inner membrane component.
 
 
 0.757
Amir_3467
PFAM: peptidase M55 D-aminopeptidase; KEGG: mrd:Mrad2831_3239 peptidase M55 D- aminopeptidase.
 
     0.717
Amir_0207
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: pde:Pden_1670 binding-protein-dependent transport systems inner membrane component.
 
 0.658
Amir_1680
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein.
 
 0.644
Amir_3067
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: dde:Dde_1328 dipeptide ABC transporter, permease protein.
 
 0.643
Amir_6187
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: scl:sce4301 peptide ABC transporter, permease protein.
 
 0.636
Amir_0208
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bha:BH3642 dipeptide ABC transporter (permease).
   0.633
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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