STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3471KEGG: scl:sce1247 hypothetical protein; Belongs to the glycosyl hydrolase 43 family. (274 aa)    
Predicted Functional Partners:
Amir_2837
PFAM: glycoside hydrolase family 43; KEGG: scl:sce4598 endo-1,4-beta-xylanase; Belongs to the glycosyl hydrolase 43 family.
 
     0.953
Amir_3213
PFAM: glycoside hydrolase family 43; Carbohydrate binding family 6; SMART: cellulose binding type IV; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
 
     0.885
Amir_4806
PFAM: coagulation factor 5/8 type domain protein; KEGG: hypothetical protein.
 
     0.869
Amir_1858
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 43 family.
   
 0.814
Amir_3926
Alpha-N-arabinofuranosidase; PFAM: glycoside hydrolase family 43; KEGG: cja:CJA_0819 alpha-L-arabinfuranosidase, putative, abf43M; Belongs to the glycosyl hydrolase 43 family.
   
 0.786
Amir_4664
PFAM: lipolytic protein G-D-S-L family; KEGG: bsu:BSU07020 hypothetical protein.
 
     0.777
Amir_3470
KEGG: sml:Smlt2568 putative LacI-family transcriptional regulator; PFAM: periplasmic binding protein/LacI transcriptional regulator; regulatory protein LacI; SMART: regulatory protein LacI.
       0.773
Amir_2174
KEGG: xcv:XCV1806 hypothetical protein.
 
     0.761
Amir_1859
PFAM: protein of unknown function DUF1680; SMART: LamG domain protein jellyroll fold domain protein; KEGG: hypothetical protein.
 
     0.760
Amir_2836
PFAM: protein of unknown function DUF1680; KEGG: hypothetical protein.
 
     0.758
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (12%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.