STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3505PFAM: conserved hypothetical protein; KEGG: dac:Daci_5761 hypothetical protein. (173 aa)    
Predicted Functional Partners:
Amir_2618
KEGG: mxa:MXAN_6120 hypothetical protein.
     0.815
Amir_0432
KEGG: mrd:Mrad2831_5798 AAA family ATPase, CDC48 subfamily protein; PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; Belongs to the AAA ATPase family.
   
 
 0.719
Amir_2933
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: noc:Noc_1879 AAA ATPase.
   
 
 0.719
Amir_5393
PFAM: AAA ATPase central domain protein; SMART: AAA ATPase; KEGG: gsu:GSU0972 AAA family ATPase.
   
 
 0.719
Amir_2283
KEGG: scl:sce8945 hypothetical protein.
 
     0.697
Amir_0662
KEGG: hypothetical protein.
 
     0.696
Amir_2593
PFAM: Appr-1-p processing domain protein; SMART: Appr-1-p processing domain protein; KEGG: reu:Reut_A1417 Appr-1-p processing.
      0.694
Amir_2511
PFAM: ATPase associated with various cellular activities AAA_5; ATPase associated with various cellular activities AAA_3; SMART: AAA ATPase; KEGG: mrd:Mrad2831_1397 ATPase.
  
     0.632
Amir_1887
PFAM: ATPase associated with various cellular activities AAA_5; SMART: AAA ATPase; KEGG: MoxR-like ATPase.
  
     0.627
Amir_1885
PFAM: VWA containing CoxE family protein; SMART: von Willebrand factor type A; KEGG: bur:Bcep18194_B1557 VWA containing CoxE-like protein.
  
     0.596
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.