STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3596PFAM: FAD dependent oxidoreductase; KEGG: xca:xccb100_1581 D-amino-acid dehydrogenase. (424 aa)    
Predicted Functional Partners:
Amir_0705
KEGG: bcy:Bcer98_0228 4-hydroxyphenylpyruvate dioxygenase; TIGRFAM: 4-hydroxyphenylpyruvate dioxygenase; PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase.
   
 
 0.905
Amir_2691
PFAM: aminotransferase class I and II; KEGG: aeh:Mlg_2554 aminotransferase.
     
 0.901
Amir_6643
PFAM: aminotransferase class I and II; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: gur:Gura_2501 aminotransferase, class I and II.
     
 0.901
pat
Histidinol-phosphate aminotransferase; May catalyze the transamination reaction in phenylalanine biosynthesis; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family.
     
  0.900
Amir_0878
PFAM: aminotransferase class I and II; KEGG: cko:CKO_02518 threonine-phosphate decarboxylase.
     
  0.900
Amir_4386
PFAM: aminotransferase class I and II; KEGG: scl:sce8915 histidinol-phosphate transaminase.
     
  0.900
hisC
TIGRFAM: histidinol-phosphate aminotransferase; PFAM: aminotransferase class I and II; KEGG: bur:Bcep18194_C7445 histidinol-phosphate aminotransferase; Belongs to the class-II pyridoxal-phosphate-dependent aminotransferase family. Histidinol-phosphate aminotransferase subfamily.
     
  0.900
Amir_3595
Putative transcriptional regulator, PucR family; KEGG: bha:BH1072 hypothetical protein.
     0.871
Amir_1496
Putative transcriptional regulator, PucR family; KEGG: bha:BH1072 hypothetical protein.
     0.736
Amir_3597
PFAM: transcription elongation factor GreA/GreB domain protein.
 
     0.666
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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