STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3685PFAM: peptidase S45 penicillin amidase; KEGG: mxa:MXAN_2906 penicillin acylase family protein. (824 aa)    
Predicted Functional Partners:
Amir_3680
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; condensation domain protein; KEGG: mxa:MXAN_4414 non-ribosomal peptide synthase.
 
    0.611
Amir_3672
PFAM: MbtH domain protein; KEGG: bbt:BBta_1084 hypothetical protein.
 
    0.530
Amir_3679
PFAM: condensation domain protein; phosphopantetheine-binding; KEGG: peptide synthetase.
  
    0.494
Amir_3686
PFAM: condensation domain protein; KEGG: reh:H16_B1685 non-ribosomal peptide synthetase.
  
    0.463
Amir_3673
PFAM: Taurine catabolism dioxygenase TauD/TfdA; KEGG: pen:PSEEN3233 SyrP protein.
 
     0.459
Amir_4913
PFAM: peptidase S45 penicillin amidase; KEGG: scl:sce8259 penicillin amidase.
  
     0.454
Amir_3674
PFAM: AMP-dependent synthetase and ligase; nitroreductase; phosphopantetheine-binding; KEGG: pen:PSEEN2716 non-ribosomal peptide synthetase.
  
    0.441
Amir_3675
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; phosphopantetheine-binding; Non-ribosomal peptide synthetase; condensation domain protein; KEGG: psb:Psyr_1792 amino acid adenylation.
  
    0.441
Amir_3682
PFAM: KR domain protein; Beta-ketoacyl synthase; Acyl transferase; short-chain dehydrogenase/reductase SDR; phosphopantetheine-binding; KEGG: mxa:MXAN_3631 polyketide synthase type I.
  
    0.428
Amir_3892
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; short-chain dehydrogenase/reductase SDR; condensation domain protein; KR domain protein; Thioesterase; phosphopantetheine-binding; KEGG: pen:PSEEN2718 polyketide synthase (terminal component).
  
  
 0.416
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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