STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3834PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family. (378 aa)    
Predicted Functional Partners:
Amir_3830
PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_1766 cyclohexanecarboxylate-CoA ligase.
 
 
   0.817
Amir_3835
Glutamine--scyllo-inositol transaminase; PFAM: DegT/DnrJ/EryC1/StrS aminotransferase; aromatic amino acid beta-eliminating lyase/threonine aldolase; KEGG: scl:sce7344 NDP-sugar aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
    
0.808
Amir_3831
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cvi:CV_1653 protoporphyrinogen oxidase.
 
     0.804
Amir_3832
PFAM: UbiA prenyltransferase; KEGG: hha:Hhal_1173 1,4-dihydroxy-2-naphthoate octaprenyltransferase.
       0.779
Amir_3833
PFAM: Methyltransferase type 11; Methyltransferase type 12; KEGG: gur:Gura_3006 methyltransferase type 11.
     
 0.777
Amir_3840
PFAM: oxidoreductase domain protein; KEGG: met:M446_2288 oxidoreductase domain- containing protein.
 
  
 0.763
Amir_1738
N-acetylglucosamine-1- phosphateuridyltransferase-like protein; KEGG: xcv:XCV3714 bifunctional isomerase / acetyl transferase.
   
 0.743
Amir_3843
TIGRFAM: nucleotide sugar dehydrogenase; PFAM: UDP-glucose/GDP-mannose dehydrogenase; UDP- glucose/GDP-mannose dehydrogenase dimerisation; UDP- glucose/GDP-mannose dehydrogenase; 6-phosphogluconate dehydrogenase NAD-binding; KEGG: sus:Acid_4597 UDP-glucose 6-dehydrogenase; Belongs to the UDP-glucose/GDP-mannose dehydrogenase family.
 
  
 0.741
Amir_3836
PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase.
 
  
 0.685
Amir_3826
Alkylhydroperoxidase like protein, AhpD family; Antioxidant protein with alkyl hydroperoxidase activity. Required for the reduction of the AhpC active site cysteine residues and for the regeneration of the AhpC enzyme activity. Belongs to the AhpD family.
       0.636
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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