STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3842Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: bbt:BBta_5331 calcium-binding domain- containing protein. (178 aa)    
Predicted Functional Partners:
gmk
Guanylate kinase; Essential for recycling GMP and indirectly, cGMP.
    
 0.803
Amir_3836
PFAM: oxidoreductase domain protein; KEGG: xac:XAC0681 oxidoreductase.
  
   0.783
Amir_3838
PFAM: peptidase M20; KEGG: sus:Acid_2224 acetylornithine deacetylase.
  
  
  0.766
Amir_6872
KEGG: predicted protein.
  
     0.747
Amir_3831
PFAM: amine oxidase; FAD dependent oxidoreductase; KEGG: cvi:CV_1653 protoporphyrinogen oxidase.
  
   
 0.735
Amir_1668
KEGG: msl:Msil_3349 hypothetical protein.
  
     0.694
Amir_6410
PFAM: major intrinsic protein; KEGG: pha:PSHAb0552 putative glycerol diffusion channel; Belongs to the MIP/aquaporin (TC 1.A.8) family.
   
 
 0.671
Amir_5179
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: scl:sce3796 FKBP-type peptidyl-prolyl cis- trans isomerase.
   
 
 0.665
Amir_5503
PFAM: peptidylprolyl isomerase FKBP-type; KEGG: tbd:Tbd_2152 peptidyl-prolyl cis-trans isomerase.
   
 
 0.665
Amir_3830
PFAM: AMP-dependent synthetase and ligase; KEGG: pla:Plav_1766 cyclohexanecarboxylate-CoA ligase.
 
   
 0.659
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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