STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3900Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bma:BMAA0201 transcriptional regulator CatR. (291 aa)    
Predicted Functional Partners:
Amir_2446
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pmy:Pmen_4546 LysR family transcriptional regulator.
  
     0.769
Amir_2782
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: mxa:MXAN_1575 transcriptional regulator, LysR family.
  
     0.769
Amir_0548
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: dvm:DvMF_0511 transcriptional regulator, LysR family.
  
     0.768
Amir_5881
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: rlt:Rleg2_1625 transcriptional regulator, LysR family.
  
     0.768
Amir_0550
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bcm:Bcenmc03_5299 LysR family transcriptional regulator.
  
     0.762
Amir_7065
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pmy:Pmen_4546 LysR family transcriptional regulator.
  
     0.762
Amir_4632
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bpt:Bpet4146 LysR family transcriptional regulator.
  
     0.758
Amir_0790
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: bsu:BSU40670 hypothetical protein.
  
     0.749
Amir_4824
Transcriptional regulator, LysR family; PFAM: LysR substrate-binding; regulatory protein LysR; KEGG: pol:Bpro_4368 transcriptional regulator, LysR family.
  
     0.699
Amir_3625
PFAM: regulatory protein LysR; KEGG: mxa:MXAN_5480 transcriptional regulator, LysR family.
  
     0.687
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.