STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_3959KEGG: acetyl xylan esterase; K01567; TIGRFAM: esterase, PHB depolymerase family; PFAM: cellulose-binding family II; SMART: cellulose-binding family II. (423 aa)    
Predicted Functional Partners:
Amir_3108
PFAM: Ricin B lectin; lipolytic protein G-D-S-L family; SMART: Ricin B lectin; KEGG: hypothetical protein.
 
 
 0.968
Amir_3987
PFAM: glycoside hydrolase family 12; KEGG: hypothetical protein; Belongs to the glycosyl hydrolase 12 (cellulase H) family.
 
     0.889
Amir_4732
Endo-1,4-beta-xylanase; KEGG: glycosyl hydrolase family 10 protein; PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II.
 
 
 0.821
Amir_4237
Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; Belongs to the glycosyl hydrolase 11 (cellulase G) family.
   
 0.797
Amir_4966
Alpha-N-arabinofuranosidase; KEGG: hypothetical protein; PFAM: glycoside hydrolase family 62; Ricin B lectin; SMART: Ricin B lectin.
 
 
   0.794
Amir_4177
PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
 
   0.781
Amir_2563
PFAM: Pectate lyase; KEGG: hypothetical protein.
 
   0.769
Amir_2571
PFAM: Pectate lyase; KEGG: hypothetical protein.
 
   0.737
Amir_3302
PFAM: glycoside hydrolase family 43; KEGG: xylosidase/glycosyl hydrolase, putative; Belongs to the glycosyl hydrolase 43 family.
  
    0.715
Amir_2167
PFAM: glycoside hydrolase family 48; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: hch:HCH_02465 RTX toxins and related Ca2+- binding protein.
  
0.701
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (30%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.