STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4042PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: reu:Reut_B4643 mandelate racemase/muconate lactonizing protein. (379 aa)    
Predicted Functional Partners:
Amir_1488
PFAM: Mandelate racemase/muconate lactonizing protein; KEGG: hypothetical protein; K01706 glucarate dehydratase.
 
  
 
0.942
Amir_1487
5-dehydro-4-deoxyglucarate dehydratase; PFAM: dihydrodipicolinate synthetase; KEGG: csa:Csal_2487 5-dehydro-4-deoxyglucarate dehydratase; Belongs to the DapA family.
 
  
 0.933
Amir_2179
PFAM: FAD linked oxidase domain protein; protein of unknown function DUF224 cysteine-rich region domain protein; KEGG: ade:Adeh_0810 hypothetical protein.
    
 0.528
Amir_4041
KEGG: ade:Adeh_3797 hypothetical protein.
       0.510
Amir_0974
PFAM: protein of unknown function DUF718; KEGG: bcm:Bcenmc03_6232 L-rhamnose 1-epimerase.
 
   
 0.418
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.