STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4104Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bha:BH0851 AraC/XylS family transcriptional regulator. (250 aa)    
Predicted Functional Partners:
Amir_4424
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: cti:RALTA_B0761 putative transcriptional regulator, AraC family.
  
     0.694
Amir_4112
PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: mxa:MXAN_7127 FG-GAP repeat protein.
  
   
 0.658
Amir_4111
Hypothetical protein; KEGG: mxa:MXAN_7127 FG-GAP repeat protein.
  
     0.640
Amir_4117
PFAM: ASPIC/UnbV domain protein; FG-GAP repeat protein; KEGG: mxa:MXAN_7127 FG-GAP repeat protein.
  
   
 0.640
Amir_4082
KEGG: pau:PA14_51770 hypothetical protein.
  
     0.631
Amir_4118
Hypothetical protein; KEGG: mxa:MXAN_7127 FG-GAP repeat protein.
  
     0.628
Amir_3366
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: bur:Bcep18194_C7080 AraC family transcriptional regulator.
  
     0.620
Amir_4083
PFAM: Beta-ketoacyl synthase; Acyl transferase; KR domain protein; short-chain dehydrogenase/reductase SDR; KEGG: mca:MCA1238 polyketide synthase.
  
   
 0.608
Amir_4455
Transcriptional regulator, AraC family; PFAM: helix-turn-helix- domain containing protein AraC type; SMART: helix-turn-helix- domain containing protein AraC type; KEGG: mno:Mnod_1588 transcriptional regulator, AraC family.
  
     0.447
Amir_5495
PFAM: Glyoxalase/bleomycin resistance protein/dioxygenase; KEGG: cti:RALTA_B0885 putative lyase.
 
    0.430
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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