STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4171PFAM: Oligopeptide transporter OPT superfamily protein; KEGG: vei:Veis_1103 oligopeptide transporter OPT superfamily protein. (566 aa)    
Predicted Functional Partners:
Amir_4170
PFAM: AroM family protein; KEGG: spe:Spro_1025 hypothetical protein.
 
     0.961
Amir_4169
PFAM: Asp/Glu/hydantoin racemase; KEGG: jan:Jann_1486 Asp/Glu racemase.
 
     0.949
Amir_4168
PFAM: protein of unknown function DUF1177; KEGG: vei:Veis_1102 protein of unknown function DUF1177.
 
     0.923
Amir_4172
PFAM: regulatory protein IclR; Transcriptional regulator IclR; SMART: regulatory protein IclR; KEGG: reu:Reut_B5545 regulatory protein, IclR.
 
     0.831
Amir_4173
PFAM: peptidase S51 dipeptidase E; KEGG: AGAP000513-PA; K05995 dipeptidase E; Belongs to the peptidase S51 family.
 
     0.738
Amir_2650
PFAM: Xylose isomerase domain protein TIM barrel; KEGG: eca:ECA0868 hypothetical protein.
  
     0.527
Amir_1775
PFAM: extracellular solute-binding protein family 3; SMART: extracellular solute-binding protein family 3; KEGG: rle:RL0985 putative solute-binding component of ABC transporter.
      
 0.481
atpB
ATP synthase F0, A subunit; Key component of the proton channel; it plays a direct role in the translocation of protons across the membrane.
   
    0.414
Amir_2651
PFAM: NADP oxidoreductase coenzyme F420-dependent; NAD-dependent glycerol-3-phosphate dehydrogenase domain protein; Acetohydroxy acid isomeroreductase catalytic domain protein; KEGG: eca:ECA0869 hypothetical protein.
  
     0.404
Amir_5907
PFAM: phosphatidate cytidylyltransferase; KEGG: mgm:Mmc1_1845 phosphatidate cytidylyltransferase; Belongs to the CDS family.
   
    0.402
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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