STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4204Diaminobutyrate/2-oxoglutarate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family. (415 aa)    
Predicted Functional Partners:
asd
Aspartate-semialdehyde dehydrogenase; Catalyzes the NADPH-dependent formation of L-aspartate- semialdehyde (L-ASA) by the reductive dephosphorylation of L-aspartyl- 4-phosphate; Belongs to the aspartate-semialdehyde dehydrogenase family.
    
 0.909
Amir_6156
PFAM: homoserine dehydrogenase; amino acid-binding ACT domain protein; homoserine dehydrogenase NAD-binding; KEGG: gme:Gmet_1629 homoserine dehydrogenase.
     
 0.908
Amir_2022
Diaminobutyrate/2-oxoglutarate aminotransferase; Catalyzes reversively the conversion of L-aspartate beta- semialdehyde (ASA) to L-2,4-diaminobutyrate (DABA) by transamination with L-glutamate; Belongs to the class-III pyridoxal-phosphate-dependent aminotransferase family.
  
  
 
0.904
Amir_2266
PFAM: Pyridoxal-dependent decarboxylase; KEGG: spe:Spro_3049 pyridoxal-dependent decarboxylase.
 
 
 0.904
Amir_4206
KEGG: rso:RSp1425 L-ornithine 5-monooxygenase oxidoreductase protein.
  
  
 0.639
Amir_4207
PFAM: FAD dependent oxidoreductase; KEGG: bpy:Bphyt_0284 FAD dependent oxidoreductase.
 
  
 0.605
Amir_4208
Methionine--tRNA ligase; PFAM: tRNA synthetase class I (M); Cupin 2 conserved barrel domain protein; KEGG: pen:PSEEN0982 methionine--tRNA ligase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
   
 0.581
Amir_4205
KEGG: bmj:BMULJ_04091 APA family basic amino acid/polyamine antiporter.
       0.562
Amir_5685
PFAM: Pyridoxal-dependent decarboxylase; KEGG: aba:Acid345_2160 aromatic-L-amino-acid decarboxylase.
 
 
 0.468
Amir_4604
TIGRFAM: amino acid adenylation domain protein; PFAM: AMP-dependent synthetase and ligase; Beta- ketoacyl synthase; Alcohol dehydrogenase GroES domain protein; short-chain dehydrogenase/reductase SDR; condensation domain protein; Acyl transferase; KR domain protein; Alcohol dehydrogenase zinc-binding domain protein; Thioesterase; phosphopantetheine-binding; KEGG: pae:PA3327 non-ribosomal peptide synthetase.
  
  
 0.405
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.