STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4237Endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 11; KEGG: sde:Sde_3061 xylanase/chitin deacetylase-like; Belongs to the glycosyl hydrolase 11 (cellulase G) family. (233 aa)    
Predicted Functional Partners:
Amir_3301
PFAM: glycoside hydrolase family 62; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: glycosyl hydrolase family 62 protein.
 
     0.904
Amir_4966
Alpha-N-arabinofuranosidase; KEGG: hypothetical protein; PFAM: glycoside hydrolase family 62; Ricin B lectin; SMART: Ricin B lectin.
 
     0.833
Amir_4134
PFAM: cellulose-binding family II; SMART: cellulose-binding family II; KEGG: scl:sce2212 putative topoisomerase.
     0.816
Amir_4732
Endo-1,4-beta-xylanase; KEGG: glycosyl hydrolase family 10 protein; PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II.
   
 0.811
Amir_5072
KEGG: endo-1,4-beta-xylanase; K01181 endo-1,4-beta-xylanase; PFAM: glycoside hydrolase family 10; cellulose- binding family II; SMART: glycoside hydrolase family 10; cellulose- binding family II.
   
 0.805
Amir_3959
KEGG: acetyl xylan esterase; K01567; TIGRFAM: esterase, PHB depolymerase family; PFAM: cellulose-binding family II; SMART: cellulose-binding family II.
   
 0.797
Amir_3303
PFAM: glycoside hydrolase family 62; cellulose- binding family II; SMART: cellulose-binding family II; KEGG: hypothetical protein.
 
     0.781
Amir_2563
PFAM: Pectate lyase; KEGG: hypothetical protein.
  
   
 0.769
Amir_2571
PFAM: Pectate lyase; KEGG: hypothetical protein.
  
   
 0.769
Amir_4177
PFAM: Pectate lyase; Ricin B lectin; SMART: Ricin B lectin; KEGG: hypothetical protein.
  
   
 0.768
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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