STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4258PFAM: O-methyltransferase family 3; KEGG: zgc:113054. (284 aa)    
Predicted Functional Partners:
Amir_4658
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: short chain dehydrogenase protein.
 
  
   0.865
Amir_4259
PFAM: 3-dehydroquinate synthase; KEGG: hypothetical protein; K01735 3- dehydroquinate synthase.
   
 0.860
Amir_7030
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: pna:Pnap_2712 short-chain dehydrogenase/reductase SDR.
 
  
   0.846
Amir_4257
KEGG: predicted protein.
 
     0.799
Amir_2704
PFAM: O-methyltransferase family 3; KEGG: mlo:mlr0279 O-methyltransferase.
  
     0.774
Amir_4256
KEGG: rce:RC1_0609 D-alanine--D-alanine ligase B.
 
     0.689
Amir_4619
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bpe:BP2854 short chain dehydrogenase.
 
  
   0.618
Amir_2180
TIGRFAM: 3-oxoacyl-(acyl-carrier-protein) reductase; PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: prw:PsycPRwf_0457 3-oxoacyl-(acyl-carrier- protein) reductase.
 
  
   0.595
Amir_4398
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: esa:ESA_01962 hypothetical protein.
 
  
   0.552
Amir_2079
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: hypothetical protein.
 
  
   0.535
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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