STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4738KEGG: smd:Smed_1835 hypothetical protein. (383 aa)    
Predicted Functional Partners:
Amir_4737
Hypothetical protein; KEGG: pzu:PHZ_c0663 type II secretion system protein N.
       0.777
Amir_4739
Hypothetical protein.
       0.777
Amir_0126
PFAM: glycosyl transferase group 1; KEGG: pae:PA1391 glycosyl transferase.
  
     0.766
Amir_4758
PFAM: peptidase M14 carboxypeptidase A; SMART: peptidase M14 carboxypeptidase A; KEGG: bba:Bd3234 carboxypeptidase T precursor.
 
     0.719
Amir_3677
PFAM: Aspartyl/Asparaginyl beta-hydroxylase; KEGG: hypothetical protein.
  
     0.651
Amir_1210
KEGG: sal:Sala_0218 hypothetical protein.
      
 0.583
Amir_3880
Methyl-accepting chemotaxis sensory transducer; PFAM: protein of unknown function DUF312; KEGG: hso:HS_1058 large adhesin.
  
     0.531
Amir_4044
PFAM: Na-Ca exchanger/integrin-beta4; SMART: Na-Ca exchanger/integrin-beta4; KEGG: hch:HCH_05909 hypothetical protein.
  
     0.522
Amir_3842
Putative signal transduction protein with EFhand domain; PFAM: Calcium-binding EF-hand-containing protein; SMART: Calcium-binding EF-hand-containing protein; KEGG: bbt:BBta_5331 calcium-binding domain- containing protein.
  
     0.520
Amir_2981
PFAM: protein of unknown function DUF1684; KEGG: acp:A2cp1_0109 protein of unknown function DUF1684.
      
 0.501
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.