STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4780PFAM: GHMP kinase; KEGG: mlo:mlr9540 hypothetical protein. (311 aa)    
Predicted Functional Partners:
Amir_5856
PFAM: cobalamin (vitamin B12) biosynthesis CbiG protein; KEGG: mag:amb0298 precorrin-3B methylase.
  
  
 0.962
Amir_4781
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: bpd:BURPS668_2001 cysteine synthase.
 
   
 0.880
Amir_1781
TIGRFAM: precorrin-3B C17-methyltransferase; precorrin-2 C20-methyltransferase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: met:M446_2442 precorrin-3B C17- methyltransferase; Belongs to the precorrin methyltransferase family.
  
  
 0.750
Amir_4777
PFAM: major facilitator superfamily MFS_1; KEGG: yen:YE2035 putative membrane transport protein.
 
     0.698
Amir_4778
PFAM: methyltransferase small; KEGG: rpe:RPE_0637 methyltransferase small.
       0.657
Amir_4779
KEGG: pca:Pcar_1737 hypothetical protein.
       0.657
cobT
Nicotinate-nucleotide/dimethylbenzimidazolephosp horibosyltransferase; Catalyzes the synthesis of alpha-ribazole-5'-phosphate from nicotinate mononucleotide (NAMN) and 5,6-dimethylbenzimidazole (DMB).
  
  
 0.470
Amir_2854
Putative spermidine/putrescine-binding periplasmic protein; KEGG: bph:Bphy_6624 extracellular solute-binding protein.
  
     0.449
Amir_1782
PFAM: Precorrin-8X methylmutase CbiC/CobH; KEGG: pmy:Pmen_4572 precorrin-8X methylmutase.
  
    0.440
Amir_5854
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cvi:CV_0813 uroporphyrin-III C- methyltransferase.
 
   
 0.436
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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