STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4792PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: sus:Acid_6073 short-chain dehydrogenase/reductase SDR. (241 aa)    
Predicted Functional Partners:
Amir_4793
PFAM: amidohydrolase 2; KEGG: hypothetical protein; K07046.
  
    0.779
Amir_2423
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: scl:sce6363 short chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.766
Amir_0035
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: hypothetical protein; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.763
Amir_5842
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: mex:Mext_3419 short-chain dehydrogenase/reductase SDR.
  
     0.757
Amir_2216
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; NAD-dependent epimerase/dehydratase; KEGG: pau:PA14_08440 putative short chain alcohol dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.752
Amir_2536
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr7343 short-chain dehydrogenase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.732
Amir_2243
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: bja:blr4790 putative oxidoreductase; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.724
Amir_6920
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: bch:Bcen2424_6846 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
     0.713
Amir_1744
PFAM: short-chain dehydrogenase/reductase SDR; KEGG: nar:Saro_3542 short-chain dehydrogenase/reductase SDR.
  
     0.697
Amir_3200
PFAM: short-chain dehydrogenase/reductase SDR; KR domain protein; KEGG: ank:AnaeK_2751 short-chain dehydrogenase/reductase SDR; Belongs to the short-chain dehydrogenases/reductases (SDR) family.
  
 
   0.693
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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