STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4794Transcriptional regulator, TetR family; PFAM: regulatory protein TetR; KEGG: ank:AnaeK_1572 regulatory protein TetR. (187 aa)    
Predicted Functional Partners:
Amir_4795
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; KEGG: acp:A2cp1_1649 NAD-dependent epimerase/dehydratase.
 
     0.869
Amir_5331
PFAM: NAD-dependent epimerase/dehydratase; Male sterility domain; dTDP-4-dehydrorhamnose reductase; KEGG: acp:A2cp1_1649 NAD-dependent epimerase/dehydratase.
 
     0.661
Amir_2304
PFAM: regulatory protein TetR; KEGG: rlt:Rleg2_0103 transcriptional regulator, TetR family.
  
     0.473
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.