STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_4889PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_1169 putative ABC transporter permease protein. (258 aa)    
Predicted Functional Partners:
Amir_4888
PFAM: NMT1/THI5 like domain protein; SMART: extracellular solute-binding protein family 3; KEGG: mes:Meso_0815 putative sulfonate transport system substrate-binding protein.
 
  
 0.963
Amir_4886
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: sat:SYN_00367 sulfate transport ATP-binding protein.
  
 0.946
Amir_2628
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: pla:Plav_0892 ABC transporter related.
  
 0.857
Amir_1233
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: aba:Acid345_0826 ABC transporter, ATPase subunit.
  
 0.851
Amir_5421
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: ABC transporter.
  
 0.794
Amir_5423
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bbt:BBta_1369 ABC transporter membrane protein.
 
     0.791
Amir_5419
PFAM: NMT1/THI5 like domain protein; KEGG: bbt:BBta_5981 ABC transporter substrate- binding protein.
 
  
 0.689
Amir_4887
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bav:BAV0644 ABC transporter, permease protein.
 
    
0.651
Amir_1234
TIGRFAM: aliphatic sulfonates family ABC transporter, periplsmic ligand-binding protein; KEGG: afw:Anae109_0427 aliphatic sulfonate ABC transporter periplasmic ligand-binding protein.
 
  
 0.593
Amir_2848
PFAM: Luciferase-like monooxygenase; KEGG: rpb:RPB_4411 luciferase-like.
  
    0.411
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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