STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5038SMART: helix-turn-helix domain protein. (287 aa)    
Predicted Functional Partners:
Amir_5037
PFAM: protein of unknown function DUF397.
       0.773
Amir_0567
PFAM: protein of unknown function DUF397.
  
     0.769
Amir_7002
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein.
  
     0.768
Amir_5874
PFAM: protein of unknown function DUF574; KEGG: scl:sce6070 hypothetical protein.
  
     0.761
Amir_6285
PFAM: protein of unknown function DUF574; KEGG: mxa:MXAN_2293 hypothetical protein.
  
     0.756
Amir_1307
PFAM: protein of unknown function DUF574; Methyltransferase type 12; KEGG: scl:sce6070 hypothetical protein.
  
     0.753
Amir_6312
PFAM: protein of unknown function DUF397.
  
     0.752
Amir_6122
PFAM: protein of unknown function DUF397.
  
     0.744
Amir_2068
PFAM: protein of unknown function DUF742.
  
     0.733
Amir_6018
PFAM: protein of unknown function DUF397.
  
     0.730
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.