STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5087PFAM: coenzyme A transferase; KEGG: pag:PLES_02231 putative CoA transferase, subunit A. (265 aa)    
Predicted Functional Partners:
Amir_5086
Glutaconate CoA-transferase; PFAM: coenzyme A transferase; KEGG: xcv:XCV0379 glutaconate CoA transferase subunit B.
 0.999
Amir_4367
PFAM: 2-nitropropane dioxygenase NPD; KEGG: rpt:Rpal_2151 2-nitropropane dioxygenase NPD.
  
  
 0.920
Amir_3429
PFAM: Amidase; KEGG: met:M446_0555 amidase; Belongs to the amidase family.
     
  0.900
Amir_5084
KEGG: reh:H16_B2290 protocatechuate 3,4-dioxygenase alpha chain; TIGRFAM: protocatechuate 3,4-dioxygenase, alpha subunit; PFAM: intradiol ring-cleavage dioxygenase.
 
  
 0.871
Amir_5085
KEGG: pfo:Pfl01_1270 protocatechuate 3,4- dioxygenase, beta subunit; TIGRFAM: protocatechuate 3,4-dioxygenase, beta subunit; PFAM: intradiol ring-cleavage dioxygenase.
 
  
 0.850
Amir_4238
PFAM: Carbamoyl-phosphate synthase L chain ATP- binding; biotin carboxylase domain protein; ATP-dependent carboxylate-amine ligase domain protein ATP-grasp; carboxyl transferase; biotin/lipoyl attachment domain- containing protein; Carbamoyl-phosphate synthetase large chain domain protein; KEGG: aba:Acid345_0466 carbamoyl-phosphate synthase L chain, ATP-binding.
  
  
 0.774
Amir_5081
PFAM: Carboxymuconolactone decarboxylase; KEGG: mlo:mlr7207 gamma carboxymuconolactone decarboxylase.
 
  
 0.727
Amir_5083
TIGRFAM: 3-oxoadipate enol-lactonase; PFAM: alpha/beta hydrolase fold; KEGG: swi:Swit_0978 3-oxoadipate enol-lactonase.
 
  
 0.705
Amir_5080
KEGG: bac:BamMC406_5247 IclR family transcriptional regulator; TIGRFAM: beta-ketoadipate pathway transcriptional regulators, PcaR/PcaU/PobR family; PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR.
 
  
 0.619
Amir_5088
KEGG: noc:Noc_2708 hypothetical protein.
     
 0.523
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (28%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.