STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5110PFAM: CsbD family protein; KEGG: pen:PSEEN4005 hypothetical protein; Belongs to the UPF0337 (CsbD) family. (57 aa)    
Predicted Functional Partners:
Amir_5446
Hypothetical protein.
   
    0.570
Amir_1777
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.555
Amir_2761
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.555
Amir_3416
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.555
Amir_3691
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.555
Amir_4233
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.555
Amir_4701
PFAM: pyridoxamine 5'-phosphate oxidase-related FMN- binding.
  
    0.555
Amir_0133
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: cbc:CbuK_1550 polysaccharide export ATP- binding protein.
  
    0.554
Amir_1349
PFAM: domain of unknown function DUF1731; NAD- dependent epimerase/dehydratase; KEGG: dal:Dalk_2335 domain of unknown function DUF1731.
   
    0.535
Amir_6914
Putative membrane protein; KEGG: dac:Daci_3973 hypothetical protein.
  
     0.529
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.