STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5308PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bam:Bamb_2642 binding-protein-dependent transport systems inner membrane component. (294 aa)    
Predicted Functional Partners:
Amir_5309
PFAM: extracellular solute-binding protein family 1; KEGG: bac:BamMC406_2511 extracellular solute- binding protein.
  0.996
Amir_5307
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: gdi:GDI2636 putative transporter protein.
  0.992
Amir_0351
PFAM: ABC transporter related; Transport-associated OB domain protein; SMART: AAA ATPase; KEGG: rlt:Rleg2_5484 ABC transporter related; Belongs to the ABC transporter superfamily.
 
 0.957
Amir_0810
PFAM: ABC transporter related; SMART: AAA ATPase; KEGG: noc:Noc_0279 ABC transporter, ATPase subunit; Belongs to the ABC transporter superfamily.
 
 0.948
Amir_5306
PFAM: Alcohol dehydrogenase GroES domain protein; Alcohol dehydrogenase zinc-binding domain protein; KEGG: scl:sce9297 putative zinc-binding dehydrogenase.
 
     0.827
Amir_4239
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: oan:Oant_2483 binding-protein-dependent transport systems inner membrane component.
   0.817
Amir_0401
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: jan:Jann_3555 binding-protein-dependent transport systems inner membrane component.
   0.786
Amir_3474
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: bur:Bcep18194_C6935 ABC sugar transporter, inner membrane subunit.
   0.785
Amir_4611
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: vei:Veis_0946 binding-protein-dependent transport systems inner membrane component.
   0.777
Amir_0350
PFAM: binding-protein-dependent transport systems inner membrane component; KEGG: acp:A2cp1_4287 binding-protein-dependent transport systems inner membrane component.
   0.767
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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