STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5324PFAM: acyltransferase 3; KEGG: mes:Meso_0485 acyltransferase 3. (675 aa)    
Predicted Functional Partners:
Amir_3596
PFAM: FAD dependent oxidoreductase; KEGG: xca:xccb100_1581 D-amino-acid dehydrogenase.
      
 0.471
Amir_0125
PFAM: acyltransferase 3; KEGG: acr:Acry_1134 acyltransferase 3.
  
     0.438
Amir_5323
Transcriptional regulator, SARP family; PFAM: transcriptional activator domain; TPR repeat- containing protein; Tetratricopeptide TPR_4; NB-ARC domain protein; transcriptional regulator domain protein; Tetratricopeptide TPR_2 repeat protein; SMART: Tetratricopeptide domain protein; KEGG: scl:sce6858 hypothetical protein.
       0.432
Amir_1077
PFAM: Carbohydrate binding family 6; glycoside hydrolase family 16; SMART: cellulose binding type IV; KEGG: hypothetical protein.
      0.430
Amir_5304
SMART: AAA ATPase; KEGG: bbr:BB2829 hypothetical protein.
   
    0.406
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.