STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5355Transcriptional regulator, MerR family; PFAM: regulatory protein MerR; SMART: regulatory protein MerR; KEGG: ade:Adeh_3310 zinc finger/thioredoxin putative. (313 aa)    
Predicted Functional Partners:
Amir_5356
FHA domain containing protein; PFAM: Forkhead-associated protein; SMART: Forkhead-associated protein; KEGG: scl:sce2902 GGDEF domain-containing protein.
 
    0.851
Amir_5353
SMART: regulatory protein MerR; KEGG: afw:Anae109_4225 MerR family transcriptional regulator.
 
   
 0.786
Amir_1006
Hypothetical protein.
   
    0.785
Amir_5354
PFAM: protein of unknown function DUF151; KEGG: dal:Dalk_2411 protein of unknown function DUF151.
     
 0.744
Amir_5358
PFAM: CDP-alcohol phosphatidyltransferase; KEGG: tmz:Tmz1t_2031 CDP-diacylglycerol/glycerol-3- phosphate 3-phosphatidyltransferase; Belongs to the CDP-alcohol phosphatidyltransferase class-I family.
       0.563
whiA
Protein of unknown function DUF199; Involved in cell division and chromosome segregation.
  
   
 0.551
Amir_0042
PFAM: nuclear export factor GLE1; KEGG: sme:SMa1200 hypothetical protein.
  
     0.535
gcvH
Glycine cleavage system H protein; The glycine cleavage system catalyzes the degradation of glycine. The H protein shuttles the methylamine group of glycine from the P protein to the T protein.
       0.526
Amir_6336
3-methyladenine DNA glycosylase/8-oxoguanine DNA glycosylase-like protein; KEGG: transcriptional regulator, AraC family.
  
     0.514
Amir_0935
PFAM: UBA/THIF-type NAD/FAD binding protein; KEGG: ank:AnaeK_3014 UBA/ThiF-type NAD/FAD binding protein.
  
     0.499
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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