STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5373PFAM: Radical SAM domain protein; KEGG: sat:SYN_02268 radical SAM superfamily protein. (327 aa)    
Predicted Functional Partners:
Amir_4537
PFAM: Radical SAM domain protein; KEGG: sfu:Sfum_2252 radical SAM domain protein.
  
     0.703
Amir_2817
PFAM: Radical SAM domain protein; KEGG: bma:BMAA1862 radical SAM domain-containing protein.
  
     0.690
Amir_5374
Histidine kinase; PFAM: ATP-binding region ATPase domain protein; histidine kinase dimerization and phosphoacceptor region; SMART: ATP-binding region ATPase domain protein; KEGG: oca:OCAR_4624 signal transduction histidine kinase containing PAS/PAC sensor domain.
 
    0.565
Amir_4385
PFAM: Prenyltransferase/squalene oxidase; KEGG: afw:Anae109_4079 squalene-hopene cyclase.
 
   
 0.533
Amir_3553
PFAM: glycosyl transferase family 2; KEGG: rru:Rru_A2348 glycosyl transferase.
 
     0.525
Amir_3725
KEGG: dac:Daci_4530 putative acyl protein synthase/acyl-CoA reductase-like protein.
  
     0.499
Amir_5375
Two component transcriptional regulator, LuxR family; PFAM: response regulator receiver; regulatory protein LuxR; SMART: response regulator receiver; regulatory protein LuxR; KEGG: bcr:BCAH187_A1601 DNA-binding response regulator.
  
    0.498
Amir_1750
TIGRFAM: 40-residue YVTN family beta-propeller repeat protein; PFAM: NHL repeat containing protein; KEGG: bca:BCE_2353 triple helix repeat-containing COllagen.
 
  
 0.481
Amir_5854
TIGRFAM: uroporphyrin-III C-methyltransferase; siroheme synthase; PFAM: Uroporphyrin-III C/tetrapyrrole (Corrin/Porphyrin) methyltransferase; KEGG: cvi:CV_0813 uroporphyrin-III C- methyltransferase.
 
  
 0.436
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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