STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5411PFAM: Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: sus:Acid_3454 tetratricopeptide TPR_4. (873 aa)    
Predicted Functional Partners:
Amir_5413
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: sus:Acid_3455 ECF subfamily RNA polymerase sigma-24 factor.
 
    0.893
Amir_5412
PFAM: peptidase S8 and S53 subtilisin kexin sedolisin; KEGG: ade:Adeh_0234 peptidase S8 and S53, subtilisin, kexin, sedolisin.
 
     0.885
Amir_0444
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: sus:Acid_3132 ECF subfamily RNA polymerase sigma-24 factor.
 
    0.782
Amir_2194
RNA polymerase, sigma-24 subunit, ECF subfamily; TIGRFAM: RNA polymerase sigma factor, sigma-70 family; PFAM: sigma-70 region 2 domain protein; KEGG: GA27442 gene product from transcript GA27442- RA.
 
    0.780
Amir_5547
Putative signal transduction protein with Nacht domain; KEGG: disease resistance-responsive family protein.
  
     0.710
Amir_6778
KEGG: pag:PLES_38291 hypothetical protein.
  
     0.673
Amir_0443
Hypothetical protein.
 
     0.655
Amir_6458
Hypothetical protein; KEGG: Muc19; mucin 19.
 
     0.564
Amir_5414
Hypothetical protein.
       0.555
Amir_5467
PFAM: Tetratricopeptide TPR_2 repeat protein; TPR repeat-containing protein; Tetratricopeptide TPR_4; SMART: Tetratricopeptide domain protein; KEGG: mxa:MXAN_1392 hypothetical protein.
 
     0.539
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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