STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5477TIGRFAM: endoribonuclease L-PSP; PFAM: Endoribonuclease L-PSP; KEGG: mmw:Mmwyl1_4387 putative endoribonuclease L- PSP. (128 aa)    
Predicted Functional Partners:
Amir_5479
PFAM: PfkB domain protein; KEGG: bha:BH3724 2-keto-3-deoxygluconate kinase.
 
     0.818
Amir_5478
PFAM: Transcriptional regulator IclR; regulatory protein IclR; SMART: regulatory protein IclR; KEGG: bha:BH2137 IclR family transcriptional regulator.
 
     0.768
Amir_5480
PFAM: alanine racemase domain protein; KEGG: lch:Lcho_0086 D-serine deaminase.
 
   
 0.628
Amir_2783
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aav:Aave_3768 threonine dehydratase.
 
 
 0.554
Amir_5481
N-acyl-D-amino-acid deacylase; PFAM: Amidohydrolase 3; D-aminoacylase domain protein; amidohydrolase; KEGG: hypothetical protein.
 
     0.549
Amir_3582
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aav:Aave_3217 pyridoxal-5'-phosphate- dependent enzyme, beta subunit.
 
 
 0.532
Amir_4633
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: met:M446_6836 threonine dehydratase.
 
 
 0.495
Amir_0405
PFAM: Pyridoxal-5'-phosphate-dependent protein beta subunit; KEGG: aba:Acid345_2084 pyridoxal-5'-phosphate- dependent enzyme, beta subunit.
 
 
 0.492
Amir_5482
TIGRFAM: gluconate transporter; PFAM: Gluconate transporter; Citrate transporter; TRAP C4-dicarboxylate transport system permease DctM subunit; KEGG: oan:Oant_4271 gluconate transporter.
       0.423
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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