STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5546PFAM: alpha/beta hydrolase fold; KEGG: xau:Xaut_2294 alpha/beta hydrolase fold. (264 aa)    
Predicted Functional Partners:
Amir_5545
PFAM: Endoribonuclease L-PSP; KEGG: nmu:Nmul_A2263 endoribonuclease L-PSP.
       0.558
Amir_4088
PFAM: alpha/beta hydrolase fold; KEGG: bja:blr8188 putative dehalogenase.
  
     0.521
Amir_4189
PFAM: alpha/beta hydrolase fold; KEGG: alpha/beta hydrolase protein.
  
     0.518
Amir_2427
PFAM: alpha/beta hydrolase fold; KEGG: rlt:Rleg2_6302 alpha/beta hydrolase fold.
  
     0.512
Amir_2496
PFAM: alpha/beta hydrolase fold; KEGG: azc:AZC_1444 beta-ketoadipate enol-lactone hydrolase protein.
  
     0.510
Amir_5124
PFAM: alpha/beta hydrolase fold; KEGG: mrd:Mrad2831_0619 alpha/beta hydrolase fold.
  
     0.466
Amir_0862
PFAM: alpha/beta hydrolase fold; KEGG: msl:Msil_2561 alpha/beta hydrolase fold protein.
  
     0.445
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.