STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5626Hypothetical protein; KEGG: bpa:BPP1618 autotransporter. (154 aa)    
Predicted Functional Partners:
Amir_5623
KEGG: dal:Dalk_5199 hypothetical protein.
       0.773
Amir_5624
Hypothetical protein.
       0.773
Amir_5625
KEGG: acr:Acry_2510 hypothetical protein.
       0.773
Amir_5627
Hypothetical protein.
       0.757
Amir_5621
PFAM: protein of unknown function DUF1483.
       0.623
Amir_5622
Hypothetical protein.
       0.623
Amir_5618
Hypothetical protein.
       0.610
Amir_5619
Hypothetical protein.
       0.610
Amir_5620
PFAM: Terminase; KEGG: acp:A2cp1_1302 terminase.
       0.610
Amir_5628
Hypothetical protein.
       0.482
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.