STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_5795Hypothetical protein; KEGG: jan:Jann_1769 mucin-associated surface protein. (262 aa)    
Predicted Functional Partners:
Amir_5796
Phage shock protein A, PspA; PFAM: PspA/IM30 family protein; KEGG: GG12650 gene product from transcript GG12650- RA.
 
  
 0.919
Amir_6942
Hypothetical protein.
  
     0.772
Amir_5736
Hypothetical protein; KEGG: trans-sialidase.
  
     0.767
Amir_6494
Hypothetical protein; KEGG: mgm:Mmc1_1473 conserved hypothetical protein, conserved.
  
     0.752
Amir_6540
KEGG: hypothetical protein.
  
     0.752
Amir_6666
KEGG: hypothetical protein.
  
     0.749
Amir_1128
Hypothetical protein; KEGG: apomucin.
  
     0.748
Amir_0730
Hypothetical protein; KEGG: DNA helicase (SGS1 homologue); K03654 ATP- dependent DNA helicase RecQ.
  
     0.744
Amir_5797
PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; KEGG: pde:Pden_1785 helix-turn-helix domain protein.
     
 0.743
Amir_0037
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: hypothetical protein.
  
     0.742
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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