STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6028PFAM: alpha/beta hydrolase fold; KEGG: afw:Anae109_2061 alpha/beta hydrolase fold. (317 aa)    
Predicted Functional Partners:
Amir_6029
Glucose/sorbosone dehydrogenase-like protein; KEGG: bha:BH2090 glucose dehydrogenase-B.
       0.664
Amir_6027
PFAM: D-isomer specific 2-hydroxyacid dehydrogenase NAD-binding; KEGG: hypothetical protein.
       0.566
Amir_6628
KEGG: fibrocystin-L-like protein.
  
  0.483
Amir_5802
SMART: regulatory protein MerR; KEGG: bmn:BMA10247_A1013 MerR family transcriptional regulator.
  
     0.478
Amir_4578
PFAM: transposase IS4 family protein; KEGG: similar to F57G4.9.
  
     0.475
Amir_7049
Hypothetical protein; KEGG: bch:Bcen2424_6767 outer membrane autotransporter.
  
     0.454
Amir_1217
Hypothetical protein.
  
     0.453
Amir_1052
KEGG: scl:sce2746 protein kinase.
  
     0.425
Amir_4926
KEGG: bxe:Bxe_B2117 CdaR family transcriptional regulator.
  
     0.409
Amir_1017
PFAM: Hemerythrin HHE cation binding domain protein; KEGG: scl:sce7477 hypothetical protein.
  
    0.404
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (14%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.