STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6082Transcriptional regulator, MarR family; PFAM: regulatory protein MarR; SMART: regulatory protein MarR; KEGG: bcz:BCZK0946 MarR family transcriptional regulator. (167 aa)    
Predicted Functional Partners:
Amir_1591
TIGRFAM: cell envelope-related function transcriptional attenuator, LytR/CpsA family; PFAM: cell envelope-related transcriptional attenuator; KEGG: bcz:BCZK4892 LytR family transcriptional regulator.
   
    0.745
Amir_2275
PFAM: AMP-dependent synthetase and ligase; KEGG: eba:ebA1206 putative acetyl-coenzyme A synthetase.
      0.730
Amir_5155
Putative transcriptional regulator; PFAM: Helix-turn-helix type 11 domain protein; KEGG: ypk:y4095 hypothetical protein.
   
    0.714
Amir_6081
PFAM: protein of unknown function DUF77; KEGG: mgm:Mmc1_2182 protein of unknown function DUF77.
       0.696
Amir_6079
PFAM: Thioredoxin domain; KEGG: trx; thioredoxin; K05838 putative thioredoxin.
       0.669
Amir_0559
Transcriptional regulator, LuxR family; PFAM: regulatory protein LuxR; Sigma-70 region 4 type 2; SMART: regulatory protein LuxR; KEGG: ank:AnaeK_3854 tetratricopeptide TPR_2 repeat protein.
   
    0.661
Amir_0338
PFAM: Silent information regulator protein Sir2; KEGG: afw:Anae109_4302 silent information regulator protein Sir2.
   
    0.648
cobB
Silent information regulator protein Sir2; NAD-dependent protein deacetylase which modulates the activities of several enzymes which are inactive in their acetylated form; Belongs to the sirtuin family. Class II subfamily.
   
    0.648
Amir_2137
PFAM: Silent information regulator protein Sir2; KEGG: sat:SYN_00042 sir2 family protein.
   
    0.648
Amir_5075
TIGRFAM: transcriptional regulator, ArgP family; PFAM: regulatory protein LysR; KEGG: bav:BAV0190 lysine export transcriptional regulator.
   
    0.637
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.