STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6332PFAM: peptidase M50; KEGG: ccs:CCNA_03492 transporter. (226 aa)    
Predicted Functional Partners:
Amir_6333
TIGRFAM: LPPG domain protein containing protein; PFAM: protein of unknown function UPF0052 and CofD; KEGG: rpb:RPB_4407 LPPG:FO 2-phospho-L-lactate transferase.
  
    0.743
Amir_6334
TIGRFAM: F420-dependent oxidoreductase; PFAM: protein of unknown function DUF129; nitroreductase; KEGG: pde:Pden_1118 F420-dependent oxidoreductase, putative.
  
    0.743
Amir_6335
PFAM: NUDIX hydrolase; KEGG: sml:Smlt2194 hypothetical protein.
       0.694
whiB-7
Transcription factor WhiB; Acts as a transcriptional regulator. Probably redox- responsive. The apo- but not holo-form probably binds DNA.
       0.469
rsmA
Dimethyladenosine transferase; Specifically dimethylates two adjacent adenosines (A1518 and A1519) in the loop of a conserved hairpin near the 3'-end of 16S rRNA in the 30S particle. May play a critical role in biogenesis of 30S subunits.
      
 0.453
Amir_0728
Hypothetical protein; KEGG: GM22731 gene product from transcript GM22731- RA.
  
     0.445
Amir_1133
Hypothetical protein.
  
     0.425
Amir_0282
PFAM: Bifunctional DNA primase/polymerase.
  
     0.418
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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