STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6345PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_1409 glycosyl transferase group 1. (364 aa)    
Predicted Functional Partners:
Amir_6344
PFAM: glycosyl transferase family 2; glycosyl transferase group 1; KEGG: dal:Dalk_0014 glycosyl transferase family 2.
 
    0.932
Amir_6342
PFAM: glycosyl transferase family 2; KEGG: pzu:PHZ_c3342 glycosyl transferase.
    0.832
Amir_2111
KEGG: pna:Pnap_0373 hypothetical protein.
  
     0.602
glgB
1,4-alpha-glucan branching enzyme; Catalyzes the formation of the alpha-1,6-glucosidic linkages in glycogen by scission of a 1,4-alpha-linked oligosaccharide from growing alpha-1,4-glucan chains and the subsequent attachment of the oligosaccharide to the alpha-1,6 position; Belongs to the glycosyl hydrolase 13 family. GlgB subfamily.
  
 0.564
Amir_7006
Hypothetical protein; KEGG: cha:CHAB381_0860 GTP-binding protein.
  
     0.564
Amir_5508
PFAM: RES domain protein; KEGG: rsh:Rsph17029_3025 hypothetical protein.
  
 
   0.559
Amir_0057
PFAM: glycosyl transferase group 1; KEGG: xcb:XC_3634 glycosyltransferase.
  
     0.558
Amir_0037
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: hypothetical protein.
  
     0.522
Amir_7004
PFAM: GTP-binding protein HSR1-related; KEGG: mca:MCA1193 hypothetical protein.
  
     0.502
Amir_6341
PFAM: glycosyl transferase group 1; KEGG: afw:Anae109_1409 glycosyl transferase group 1.
 
    
0.500
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
Server load: low (18%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.