STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6359Hypothetical protein. (143 aa)    
Predicted Functional Partners:
Amir_6362
Hypothetical protein.
 
     0.871
Amir_6361
PFAM: cell divisionFtsK/SpoIIIE; KEGG: pha:PSHAb0091 cell divisionFtsK/SpoIIIE domain-containing protein.
 
     0.866
Amir_0922
Hypothetical protein.
 
     0.795
Amir_0921
DNA segregation ATPase FtsK/SpoIIIE-related protein; KEGG: pha:PSHAb0091 cell divisionFtsK/SpoIIIE domain-containing protein.
 
     0.788
Amir_1288
PFAM: cell divisionFtsK/SpoIIIE; KEGG: bac:BamMC406_0006 cell divisionFtsK/SpoIIIE.
 
     0.768
Amir_6360
Hypothetical protein.
       0.746
Amir_1113
PFAM: cell divisionFtsK/SpoIIIE; KEGG: abu:Abu_1159 cell division protein FtsK.
 
     0.664
Amir_6358
Transcriptional regulator, GntR family; PFAM: regulatory protein GntR HTH; SMART: regulatory protein GntR HTH; KEGG: met:M446_0773 GntR family transcriptional regulator.
 
     0.586
Amir_6363
Hypothetical protein.
 
     0.573
Amir_6364
PFAM: integrase family protein; KEGG: bce:BC1272 DNA integration/recombination/invertion protein; Belongs to the 'phage' integrase family.
 
     0.529
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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