STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
Amir_6383KEGG: Hypothetical protein CBG02561. (781 aa)    
Predicted Functional Partners:
Amir_6382
Hypothetical protein; KEGG: predicted gene, 100042292.
       0.803
Amir_2189
Hypothetical protein; KEGG: GH21940 gene product from transcript GH21940- RA.
  
 
   0.764
Amir_6942
Hypothetical protein.
  
     0.741
Amir_0153
Hypothetical protein; KEGG: SAMD1; sterile alpha motif domain containing 1.
  
     0.699
Amir_0037
Transcriptional regulator, XRE family; PFAM: helix-turn-helix domain protein; SMART: helix-turn-helix domain protein; Tetratricopeptide domain protein; KEGG: hypothetical protein.
  
     0.684
Amir_0658
KEGG: hha:Hhal_1304 diguanylate cyclase; TIGRFAM: diguanylate cyclase; PFAM: GGDEF domain containing protein; SMART: GGDEF domain containing protein.
  
     0.651
Amir_5795
Hypothetical protein; KEGG: jan:Jann_1769 mucin-associated surface protein.
  
     0.650
Amir_5736
Hypothetical protein; KEGG: trans-sialidase.
  
     0.642
Amir_7004
PFAM: GTP-binding protein HSR1-related; KEGG: mca:MCA1193 hypothetical protein.
  
     0.616
Amir_2111
KEGG: pna:Pnap_0373 hypothetical protein.
  
    0.604
Your Current Organism:
Actinosynnema mirum
NCBI taxonomy Id: 446462
Other names: A. mirum DSM 43827, Actinosynnema mirum DSM 43827, Actinosynnema mirum str. DSM 43827, Actinosynnema mirum strain DSM 43827
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.